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To find out how to access new and old versions of software, please read our Accessing Other Software Versions help page.
| Product Name | Version | Description |
| ANT | 1.5.4 | A Java based build tool. In theory it is kind of like "make" without makes wrinkles and with the full portability of pure java code. http://ant.apache.org/ |
| Apache | 1.3.27 | Web server. http://www.apache.org/ |
| Berkeley DB | 4.1.25 | An embedded database programmatic toolkit from Sleepycat (now Oracle). http://www.oracle.com/database/berkeley-db/ |
| Bison (GNU) | 1.25 | Parser generator (yacc replacement). http://www.gnu.org/software/bison/ |
| BOXSHADE | 3.3.1 | BOXSHADE is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. http://www.ch.embnet.org/software/BOX_faq.html |
| Elm | 2.5.3 | Elm is an interactive screen-oriented mailer program that supersedes mail and mailx. http://www.instinct.org/elm/ |
| EMACS | 20.4 | Emacs is the extensible, customizable, self-documenting real-time display editor. http://www.gnu.org/software/emacs/ |
| Expect | 5.31 | Expect is a program that "talks" to other interactive pro- grams according to a script. http://expect.nist.gov/ |
| Fetchmail | 5.4.1 | A mail-retrieval and forwarding utility. http://fetchmail.berlios.de/ |
| Fortran 77 | 5.3 | Formula translating programming language |
| Fortran 95 | 6.2 | Formula translating programming language |
| GCC | 2.95.2, 3.2.1 | GNU project C compiler |
| GCG | 10.1 | Genetics Computer Group Sequence Analysis Software Package. http://www.accelrys.com/products/gcg/ |
| HLM | 5.00 | Hierarchical Linear and Nonlinear Modeling (HLM). http://www.ssicentral.com/hlm/ |
| ImageMagick | 3.9.1 | A software suite to create, edit, and compose bitmap images. http://www.imagemagick.org/ |
| J2SDK | 1.3.1, 1.4.2 | Java 2 Software Development Kit. http://java.sun.com/javase |
| Jikes | 1.17 | Java source to bytecode compiler. http://jikes.sourceforge.net/ |
| Jove | 4.16 | Interactive display-oriented text editor (like emacs). |
| LISREL | 8.53 | Structural equation modeling statistical package http://www.ssicentral.com/lisrel/ |
| Lynx | 2.8.3 | Text web browser. http://lynx.isc.org/ |
| Maple V | Rel 6 | A comprehensive mathematical problem-solving and programming environment. http://infranet.uwaterloo.ca/infranet/MAPLE.HTM http://www.maplesoft.com/ |
| Mathematica | 4.0.1 | Mathematica system for X is an integrated system for technical computation, with extensive numerical, symbolic, graphical, programming, and interfacing capabilities. http://www.wolfram.com/products/mathematica/ |
| Matlab | 5.3.1 | MATLAB® is a high-level technical computing language and interactive environment for algorithm development, data visualization, data analysis, and numeric computation. http://www.mathworks.com/products/matlab/ |
| Metamail | 2.7 | infrastructure for mailcap-based multimedia mail handling |
| NAG | Mk17 | Numerical Algorithms Group fortran library. http://www.nag.co.uk/ |
| PAML | 1.3 | Phylogenetic Analysis by Maximum Likelihood (PAML) http://abacus.gene.ucl.ac.uk/software/paml.html |
| Perl | 5.005_03, 5.8.0 | Perl programming languge. http://www.perl.org/ |
| PGP | 2.6.2, 6.5.8 | Pretty Good Privacy encryption system |
| PHYLIP | 3.572c | PHYLogeny Inference Package. Computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). http://evolution.genetics.washington.edu/phylip.html |
| Pine | 4.44 | Program for Internet News & Email - a tool for reading, sending, and managing electronic messages. http://www.washington.edu/pine/ |
| Procmail | 3.15.2 | Autonomous mail processor. |
| Python | 2.2.2(for testing) | Python programming language. http://www.python.org/ |
| QPopper | 4.0.3 | Qualcomm version of popper, the POP3 email server. http://www.eudora.com/products/unsupported/qpopper/ |
| SAS | 9.1.3 SP3 | Statistical analysis software package. http://www.sas.com/ |
| Sendmail (exim) | Mail transfer agent. http://www.exim.org/ | |
| SPSS | 6.1.4 | Statistical Package for the Social Sciences. http://www.spss.com/ |
| Stata | 6.0, 9.2 | Stata statistics/data analysis package. http://www.stata.com/ |
| Sun C Compiler (cc) | 5.3 | C programming language compiler |
| Sun Solaris 8 Operating System | 5.8 | Operating System. http://www.sun.com/software/solaris/support/sol8.xml |
| TCL/TK | 8.3.2 | Tool Command Language. http://www.tcl.tk/ |
| TeX | 3.14159 (C version 6.1) | Text formating and typesetting package. http://www.tug.org/ |
| Tiff | 3.4 (Libtiff 3.8.2) | LibTIFF - Tag Image File Format (TIFF) Library and Utilities. http://www.libtiff.org/ |
| Tin | 1.4.3 | A Usenet news reader |
| Top | 3.5beta12 | Utility to display top 15 processes on system |
| VIM | 5.7, 6.0aq, 6.3 | Vi IMproved text editor. http://www.vim.org/ |
Please send comments to: socrates_consult@berkeley.edu. For additional
questions, see Questions.
Last updated 8 Jan 2008.